Welcome to the REDalign web server (v1.12.alpha).

REDalign is an efficient tool for RNA structural alignment.

Paste or upload your sequence pairs file in fasta format and click Submit. The system will predict the RNA secondary structure based on Rfam database. To get more information, please refer to the article REDalign: Accurate RNA Structural Alignment using Residual Encoder-Decoder Network.

Paste your sequence below:    [example]   [clear]

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RNA Structure Analysis Resource


RNA structures and alignments database by Mathews Lab: [RNAStralign]

REDfold wheel package v1.14.alpha: [REDfold]

Scheduled maintenance


Maintenance on 08.10.